Genomic and Molecular Perspectives of Host-pathogen Interaction and Resistance Strategies against White Rust in Oilseed Mustard.
Identifieur interne : 000149 ( Main/Exploration ); précédent : 000148; suivant : 000150Genomic and Molecular Perspectives of Host-pathogen Interaction and Resistance Strategies against White Rust in Oilseed Mustard.
Auteurs : Chatterjee Anupriya [Inde] ; Nirwan Shradha [Inde] ; Bandyopadhyay Prasun [Inde] ; Agnihotri Abha [Inde] ; Sharma Pankaj [Inde] ; Malik Zainul Abdin [Inde] ; Shrivastava Neeraj [Inde]Source :
- Current genomics [ 1389-2029 ] ; 2020.
Abstract
Oilseed brassicas stand as the second most valuable source of vegetable oil and the third most traded one across the globe. However, the yield can be severely affected by infections caused by phytopathogens. White rust is a major oomycete disease of oilseed brassicas resulting in up to 60% yield loss globally. So far, success in the development of oomycete resistant Brassicas through conventional breeding has been limited. Hence, there is an imperative need to blend conventional and frontier biotechnological means to breed for improved crop protection and yield. This review provides a deep insight into the white rust disease and explains the oomycete-plant molecular events with special reference to Albugo candida describing the role of effector molecules, A. candida secretome, and disease response mechanism along with nucleotide-binding leucine-rich repeat receptor (NLR) signaling. Based on these facts, we further discussed the recent progress and future scopes of genomic approaches to transfer white rust resistance in the susceptible varieties of oilseed brassicas, while elucidating the role of resistance and susceptibility genes. Novel genomic technologies have been widely used in crop sustainability by deploying resistance in the host. Enrichment of NLR repertoire, over-expression of R genes, silencing of avirulent and disease susceptibility genes through RNA interference and CRSPR-Cas are technologies which have been successfully applied against pathogen-resistance mechanism. The article provides new insight into Albugo and Brassica genomics which could be useful for producing high yielding and WR resistant oilseed cultivars across the globe.
DOI: 10.2174/1389202921999200508075410
PubMed: 33071612
PubMed Central: PMC7521032
Affiliations:
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2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062</wicri:regionArea><wicri:noRegion>New Delhi-110062</wicri:noRegion></affiliation></author><author><name sortKey="Shradha, Nirwan" sort="Shradha, Nirwan" uniqKey="Shradha N" first="Nirwan" last="Shradha">Nirwan Shradha</name><affiliation wicri:level="1"><nlm:affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 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2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062</wicri:regionArea><wicri:noRegion>New Delhi-110062</wicri:noRegion></affiliation></author><author><name sortKey="Pankaj, Sharma" sort="Pankaj, Sharma" uniqKey="Pankaj S" first="Sharma" last="Pankaj">Sharma Pankaj</name><affiliation wicri:level="1"><nlm:affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062</wicri:regionArea><wicri:noRegion>New Delhi-110062</wicri:noRegion></affiliation></author><author><name sortKey="Abdin, Malik Zainul" sort="Abdin, Malik Zainul" uniqKey="Abdin M" first="Malik Zainul" last="Abdin">Malik Zainul Abdin</name><affiliation wicri:level="1"><nlm:affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062</wicri:regionArea><wicri:noRegion>New Delhi-110062</wicri:noRegion></affiliation></author><author><name sortKey="Neeraj, Shrivastava" sort="Neeraj, Shrivastava" uniqKey="Neeraj S" first="Shrivastava" last="Neeraj">Shrivastava Neeraj</name><affiliation wicri:level="1"><nlm:affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062</wicri:regionArea><wicri:noRegion>New Delhi-110062</wicri:noRegion></affiliation></author></analytic><series><title level="j">Current genomics</title><idno type="ISSN">1389-2029</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Oilseed brassicas stand as the second most valuable source of vegetable oil and the third most traded one across the globe. However, the yield can be severely affected by infections caused by phytopathogens. White rust is a major oomycete disease of oilseed brassicas resulting in up to 60% yield loss globally. So far, success in the development of oomycete resistant Brassicas through conventional breeding has been limited. Hence, there is an imperative need to blend conventional and frontier biotechnological means to breed for improved crop protection and yield. This review provides a deep insight into the white rust disease and explains the oomycete-plant molecular events with special reference to <i>Albugo candida</i> describing the role of effector molecules, <i>A. candida</i> secretome, and disease response mechanism along with nucleotide-binding leucine-rich repeat receptor (NLR) signaling. Based on these facts, we further discussed the recent progress and future scopes of genomic approaches to transfer white rust resistance in the susceptible varieties of oilseed brassicas, while elucidating the role of resistance and susceptibility genes. Novel genomic technologies have been widely used in crop sustainability by deploying resistance in the host. Enrichment of NLR repertoire, over-expression of <i>R</i> genes, silencing of avirulent and disease susceptibility genes through RNA interference and CRSPR-Cas are technologies which have been successfully applied against pathogen-resistance mechanism. The article provides new insight into Albugo and Brassica genomics which could be useful for producing high yielding and WR resistant oilseed cultivars across the globe.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">33071612</PMID><DateRevised><Year>2020</Year><Month>10</Month><Day>22</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">1389-2029</ISSN><JournalIssue CitedMedium="Print"><Volume>21</Volume><Issue>3</Issue><PubDate><Year>2020</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Current genomics</Title><ISOAbbreviation>Curr Genomics</ISOAbbreviation></Journal><ArticleTitle>Genomic and Molecular Perspectives of Host-pathogen Interaction and Resistance Strategies against White Rust in Oilseed Mustard.</ArticleTitle><Pagination><MedlinePgn>179-193</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.2174/1389202921999200508075410</ELocationID><Abstract><AbstractText>Oilseed brassicas stand as the second most valuable source of vegetable oil and the third most traded one across the globe. However, the yield can be severely affected by infections caused by phytopathogens. White rust is a major oomycete disease of oilseed brassicas resulting in up to 60% yield loss globally. So far, success in the development of oomycete resistant Brassicas through conventional breeding has been limited. Hence, there is an imperative need to blend conventional and frontier biotechnological means to breed for improved crop protection and yield. This review provides a deep insight into the white rust disease and explains the oomycete-plant molecular events with special reference to <i>Albugo candida</i> describing the role of effector molecules, <i>A. candida</i> secretome, and disease response mechanism along with nucleotide-binding leucine-rich repeat receptor (NLR) signaling. Based on these facts, we further discussed the recent progress and future scopes of genomic approaches to transfer white rust resistance in the susceptible varieties of oilseed brassicas, while elucidating the role of resistance and susceptibility genes. Novel genomic technologies have been widely used in crop sustainability by deploying resistance in the host. Enrichment of NLR repertoire, over-expression of <i>R</i> genes, silencing of avirulent and disease susceptibility genes through RNA interference and CRSPR-Cas are technologies which have been successfully applied against pathogen-resistance mechanism. The article provides new insight into Albugo and Brassica genomics which could be useful for producing high yielding and WR resistant oilseed cultivars across the globe.</AbstractText><CopyrightInformation>© 2020 Bentham Science Publishers.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Anupriya</LastName><ForeName>Chatterjee</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shradha</LastName><ForeName>Nirwan</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prasun</LastName><ForeName>Bandyopadhyay</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abha</LastName><ForeName>Agnihotri</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pankaj</LastName><ForeName>Sharma</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abdin</LastName><ForeName>Malik Zainul</ForeName><Initials>MZ</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Neeraj</LastName><ForeName>Shrivastava</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>1Amity Institute of Microbial Technology, Amity University, Uttar Pradesh, Noida-201313, India; 2International Centre for Genetic Engineering and Biotechnology, Aruna Asaf Ali Marg, New Delhi-110067, India; 3Centre for Agricultural Biotechnology, Amity Institute of Microbial Technology, Amity University Uttar Pradesh, Noida-201313, India; 4Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida-201313, India; 5Department of Biotechnology, Jamia Hamdard University, New Delhi-110062, India.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United Arab Emirates</Country><MedlineTA>Curr Genomics</MedlineTA><NlmUniqueID>100960527</NlmUniqueID><ISSNLinking>1389-2029</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Albugo candida</Keyword><Keyword MajorTopicYN="N">brassica</Keyword><Keyword MajorTopicYN="N">effector molecules</Keyword><Keyword MajorTopicYN="N">nucleotide-binding leucine-rich repeats (NLRs)</Keyword><Keyword MajorTopicYN="N">resistance (R) genes</Keyword><Keyword MajorTopicYN="N">white rust resistance</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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